Cannot say what/how clonedisk does, all I can do is provide some info.
The MBR has 4 partition entries (and thus you cannot have more than 4 partition entries in it, these can be either max 4 primary or max 3 primary and max 1 Extended).
By convention you cannot have more than one Extended partition.
The Partition ID for the Extended partition must be either 05 or 0F.
Whilst an entry for a primary partition points to a PBR (Partition Boot Record) or Vbr (Volume Boot Record) i..e the bootsector or first sector of the volume, the entry for the Extended Partition points to an EMBR (Extended partition Master Boot Record) or EPBR (Extended Partition Boot Record).
The EMBR has a structure similar to the MBR.
To recap, the MBR is made of 5 parts:
1. 0 to 439 <- CODE
2. 440 to 443 <- Disk Signature 4 bytes
3. 444 to 445 <- Unused
4.1 446 to 461 <- First partition entry 16 bytes
4.2 462 to 477 <- Second partition entry 16 bytes
4.3 478 to 493 <- Third partition entry 16 bytes
4.4. 494 to 509 <- Fourth partition entry
5. 510 to 511 <- Magic Bytes 55AA
The EMBR uses the SAME structure, but ONLY a few parts of it are used:
1. 0 to 439 <- UNUSED
2. 440 to 443 <- UNUSED
3. 444 to 445 <- Unused
4.1 446 to 461 <- First partition entry 16 bytes <- this points to the (only) volume addressed in the EMBR
4.2 462 to 477 <- Second partition entry 16 bytes <- this points to "next" EMBR (if any) and has partition ID of 05
4.3 478 to 493 <- UNUSED
4.4. 494 to 509 <- UNUSED
5. 510 to 511 <- Magic Bytes 55AA
In practice the Extended partition is made by a "chain" of EMBR's each one with two entries, the first being the volume inside and the second being the the next EMBR (if more than one volume is present.
So, if you have more than one volume in an Extended partition you will jave an EMBR1, and EMBR2, etc.
Check this (good ol' partition primer):
http://www.ranish.com/part/
since the site is not working properly I am attaching it in a form that is viewable offline.
Check also this:
http://technet.micro...y/cc976786.aspx
strangely enough the good MS guys provided a clear enough set of documentation and images.
Wonko